Mustafa Sarımollaoğlu

Mustafa Sarımollaoğlu, Ph.D.

Arkansas Nanomedicine Center, University of Arkansas for Medical Sciences, 4301 West Markham Street, Little Rock, AR 72205, USA

E-mail: mustafa |at| sarimollaoglu.com

You may find more about me on the following networks:

Google Scholar, LinkedIn, ORCID, PubMed, ResearchGate, Scopus

EDUCATION

Ph.D. — Integrated Computing, University of Arkansas at Little Rock, AR, USA

M.S. & B.S. — Electronics and Communication Engineering, Istanbul Technical University, Istanbul, Turkey

RESEARCH INTERESTS

Photoacoustics, flow cytometry, biomedical signal processing, image processing, neural networks, music information retrieval.

PUBLICATIONS

Book Chapters

1. Juratli MA, Nedosekin DA, Sarimollaoglu M, Siegel ER, Galanzha EI, Zharov VP. (2017) “Circulating tumor cells as predictive marker in metastatic disease.” In: Retsky M, Demicheli R (eds.), Perioperative inflammation as a triggering origin of metastasis development (pp. 109-122). Houton, Netherlands: Springer International Publishing. doi: 10.1007/978-3-319-57943-6_5.

Peer-Reviewed Journals

1. Sindeeva OA, Verkhovskii RA, Sarimollaoglu M, Afanaseva GA, Fedonnikov AS, Osintsev EY, Kurochkina EN, Gorin DA, Deyev SM, Zharov VP, Galanzha EI. "New Frontiers in Diagnosis and Therapy of Circulating Tumor Markers in Cerebrospinal Fluid In Vitro and In Vivo." Cells. 2019 Oct 2;8(10). pii: E1195. doi: 10.3390/cells8101195. PMID: 31581745

2. Stolarz AJ, Sarimollaoglu M, Marecki JC, Fletcher TW, Galanzha EI, Rhee SW, Zharov VP, Klimberg VS, Rusch NJ. "Doxorubicin Activates Ryanodine Receptors in Rat Lymphatic Muscle Cells to Attenuate Rhythmic Contractions and Lymph Flow." J Pharmacol Exp Ther. 2019 Aug 22. pii: jpet.119.257592. doi: 10.1124/jpet.119.257592. PMID: 31439806

3. Galanzha EI, Menyaev YA, Yadem AC, Sarimollaoglu M, Juratli MA, Nedosekin DA, Foster SR, Jamshidi-Parsian A, Siegel ER, Makhoul I, Hutchins LF, Suen JY, Zharov VP. "In vivo liquid biopsy using Cytophone platform for photoacoustic detection of circulating tumor cells in patients with melanoma." Sci Transl Med. 2019 Jun 12;11(496). doi: 10.1126/scitranslmed.aat5857. PMID: 31189720

4. Nima ZA, Watanabe F, Jamshidi-Parsian A, Sarimollaoglu M, Nedosekin DA, Han M, Watts JA, Biris AS, Zharov VP, and Galanzha EI. "Bioinspired magnetic nanoparticles as multimodal photoacoustic, photothermal and photomechanical contrast agents." Sci Rep. 2019 Jan 29;9(1):887. doi: 10.1038/s41598-018-37353-5. PMID: 30696936

5. Novoselova MV, Bratashov DN, Sarimollaoglu M, Nedosekin DA, Harringston W, Alex Watts J, Han M, Khlebtsov BN, Galanzha EI, Gorin DA, Zharov VP. "Photoacoustic and fluorescent effects in multilayer plasmon-dye interfaces.” J Biophotonics. 2019 Apr;12(4):e201800265. doi: 10.1002/jbio.201800265. Epub 2019 Jan 6. PMID: 30511464

6. Juratli MA, Menyaev YA, Sarimollaoglu M, Melerzanov AV, Nedosekin DA, Culp WC, Suen JY, Galanzha EI, Zharov VP. “Noninvasive label-free detection of circulating white and red blood clots in deep vessels with a focused photoacoustic probe.” Biomed Opt Express. 2018 Oct 23;9(11):5667-5677. doi: 10.1364/BOE.9.005667. eCollection 2018 Nov 1. PMID: 30460154

7. Jawad HJ, Sarimollaoglu M, Biris AS, Zharov VP. "Dynamic blood flow phantom with negative and positive photoacoustic contrasts," Biomed Opt Express. 2018 Sep 10;9(10):4702-4713. doi: 10.1364/BOE.9.004702. eCollection 2018 Oct 1. PMID: 30319897

8. Sarimollaoglu M, Stolarz AJ, Nedosekin DA, Garner BR, Fletcher TW, Galanzha EI, Rusch NJ, Zharov VP. “High-speed microscopy for in vivo monitoring of lymph dynamics.” J Biophotonics. 2018 Aug;11(8):e201700126. doi: 10.1002/jbio.201700126. Epub 2018 Jan 11. PMID: 29232054

9. Koonce NA, Juratli MA, Cai C, Sarimollaoglu M, Menyaev YA, Dent J, Quick CM, Dings RPM, Nedosekin D, Zharov V, Griffin RJ. "Real-time monitoring of circulating tumor cell (CTC) release after nanodrug or tumor radiotherapy using in vivo flow cytometry.” Biochem Biophys Res Commun. 2017 Oct 21;492(3):507-512. doi: 10.1016/j.bbrc.2017.08.053. Epub 2017 Aug 16. PMID: 28822765

10. Galanzha EI, Weingold R, Nedosekin DA, Sarimollaoglu M, Nolan J, Harrington W, Kuchyanov AS, Parkhomenko RG, Watanabe F, Nima Z, Biris AS, Plekhanov AI, Stockman MI, Zharov VP. "Spaser as a biological probe." Nat Commun. 2017 Jun 8;8:15528. doi: 10.1038/ncomms15528. PMID: 28593987

11. Stolarz AJ, Garner BR, Fletcher TW, Sarimollaoglu M, Galanzha EI, Zharov VP, Rusch NJ. "Characterization of a surgical model of lymphatic insufficiency in the rat mesentery" FASEB J. 2017 Apr 1;31(1_supplement):1001.7.

12. Nedosekin DA, Fahmi T, Nima ZA, Nolan J, Cai C, Sarimollaoglu M, Dervishi E, Basnakian A, Biris AS, Zharov VP. "Photoacoustic in vitro flow cytometry for nanomaterial research. "Photoacoustics. 2017 Mar 27;6:16-25. doi: 10.1016/j.pacs.2017.03.002. eCollection 2017 Jun. PMID: 28417068

13. Nolan J, Sarimollaoglu M, Nedosekin DA, Jamshidi-Parsian A, Galanzha E, Kore R, Griffin RJ, Zharov VP. "In vivo flow cytometry of circulating tumor-associated exosomes." Anal Cell Pathol (Amst). 2016;2016:1628057. Epub 2016 Nov 14. doi: 10.1155/2016/1628057. PMID: 27965916

14. Cai C, Nedosekin DA, Menyaev YA, Sarimollaoglu M, Proskurnin MA, Zharov VP. “Photoacoustic Flow Cytometry for Single Sickle Cell Detection In Vitro and In Vivo.” Anal Cell Pathol (Amst). 2016;2016:2642361. Epub 2016 Sep 1. doi: 10.1155/2016/2642361. PMID: 27699143

15. Menyaev YA, Carey KA, Nedosekin DA, Sarimollaoglu M, Galanzha EI, Stumhofer JS, Zharov VP. "Preclinical photoacoustic models: application for ultrasensitive single cell malaria diagnosis in large vein and artery." Biomed Opt Express. 2016 Aug 24;7(9):3643-3658. eCollection 2016. doi: 10.1364/BOE.7.003643. PMID: 27699126

16. Juratli MA, Menyaev YA, Sarimollaoglu M, Siegel ER, Nedosekin DA, Suen JY, Melerzanov AV, Juratli TA, Galanzha EI, Zharov VP. "Real-Time Label-Free Embolus Detection Using In Vivo Photoacoustic Flow Cytometry." PLoS One. 2016 May 26;11(5):e0156269. doi: 10.1371/journal.pone.0156269. eCollection 2016. PMID: 27227413

17. Cai C, Carey KA, Nedosekin DA, Menyaev YA, Sarimollaoglu M, Galanzha EI, Stumhofer JS, Zharov VP. “In Vivo Photoacoustic Flow Cytometry for Early Malaria Diagnosis.” Cytometry A. 2016 Jun;89(6):531-42. doi: 10.1002/cyto.a.22854. Epub 2016 Apr 14. PMID: 27078044

18. Stolarz AJ, Fletcher TW, Marecki JC, Sarimollaoglu M, Galanzha EI, Zharov VP, Klimberg S, Rusch NJ. "Doxorubicin Acutely Inhibits Lymph Flow in Rat Mesenteric Lymph Vessels." FASEB J. 2016 Apr 1;30(1_supplement):1201.2.

19. Galanzha EI, Viegas MG, Malinsky TI, Melerzanov AV, Juratli MA, Sarimollaoglu M, Nedosekin DA, Zharov VP. “In vivo acoustic and photoacoustic focusing of circulating cells.” Sci Rep. 2016 Mar 16;6:21531. doi: 10.1038/srep21531. PMID: 26979811

20. Juratli MA, Siegel E, Nedosekin DA, Sarimollaoglu M, Jamshidi-Parsian A, Cai C, Menyaev YA, Suen JY, Galanzha EI, Zharov VP. “In Vivo Long-Term Monitoring of Circulating Tumor Cells Fluctuation During Medical Interventions.” PLoS One. 2015 Sep 14;10(9):e0137613. doi: 10.1371/journal.pone.0137613. eCollection 2015. PMID: 26367280

21. Galanzha EI, Weingold R, Nedosekin DA, Sarimollaoglu M, Kuchyanov AS, Parkhomenko RG, Plekhanov AI, Stockman MI, Zharov VP. "Spaser as novel versatile biomedical tool" (Submitted on 2 Jan 2015) arXiv:1501.00342 [cond-mat.mes-hall] https://arxiv.org/abs/1501.00342

22. Sarimollaoglu M, Nedosekin DA, Menyaev YA, Juratli MA, Zharov VP. “Nonlinear photoacoustic signal amplification from single targets in absorption background.” Photoacoustics. 2014 Mar 1;2(1): 1–11. doi: 10.1016/j.pacs.2013.11.002. Epub 2013 Nov 20. PMID: 24921062

23. Juratli MA, Sarimollaoglu M, Nedosekin DA, Melerzanov AV, Zharov VP, Galanzha EI. “Dynamic Fluctuation of Circulating Tumor Cells during Cancer Progression.” Cancers (Basel). 2014 Jan 15;6(1):128-42. doi: 10.3390/cancers6010128. PMID: 24434542

24. Menyaev YA, Nedosekin DA, Sarimollaoglu M, Juratli MA, Galanzha EI, Tuchin VV, Zharov VP. “Optical clearing in photoacoustic flow cytometry.” Biomed Opt Express. 2013 Nov 27;4(12):3030-41. doi: 10.1364/BOE.4.003030. eCollection 2013. PMID: 24409398

25. Galanzha EI, Nedosekin DA, Sarimollaoglu M, Orza AI, Biris AS, Verkhusha VV, Zharov VP. "Photoacoustic and photothermal cytometry using photoswitchable proteins and nanoparticles with ultrasharp resonances." J Biophotonics. 2015 Jan;8(1-2):81-93. doi: 10.1002/jbio.201300140. Epub 2013 Nov 20. PMID: 24259123 Erratum in: J Biophotonics. 2015 Aug;8(8):687.

26. Juratli MA, Sarimollaoglu M, Siegel E, Nedosekin DA, Galanzha E, Suen JY, Zharov VP. “Real-time monitoring of circulating tumor-cell release during tumor manipulation using in vivo photoacoustic and fluorescent flow cytometry.” Head Neck. 2014 Aug;36(8):1207-15. doi: 10.1002/hed.23439. Epub 2013 Nov 29. PMID: 23913663

27. Nedosekin DA, Juratli MA, Sarimollaoglu M, Moore CL, Rusch NJ, Smeltzer MS, Zharov VP, Galanzha EI. ”Photoacoustic and photothermal detection of circulating tumor cells, bacteria and nanoparticles in cerebrospinal fluid in vivo and ex vivo.” J Biophotonics. 2013 Jun;6(6-7):523-33. doi: 10.1002/jbio.201200242. Epub 2013 May 16. PMID: 23681943

28. Galanzha EI, Shashkov EV, Sarimollaoglu M, Beenken KE, Basnakian AG, Shirtliff ME, Kim JW, Smeltzer MS, Zharov VP. “In vivo magnetic enrichment, photoacoustic diagnosis, and photothermal purging of infected blood using multifunctional gold and magnetic nanoparticles.” PLoS One. 2012;7(9):e45557. doi: 10.1371/journal.pone.0045557. Epub 2012 Sep 26. PMID: 23049814

29. Nedosekin DA, Sarimollaoglu M, Galanzha EI, Sawant R, Torchilin VP, Verkhusha VV, Ma J, Frank MH, Biris AS, Zharov VP. “Synergy of photoacoustic and fluorescence flow cytometry of circulating cells with negative and positive contrasts.” J Biophotonics. 2013 May;6(5):425-34. doi: 10.1002/jbio.201200047. Epub 2012 Aug 20. PMID: 22903924

30. Sarimollaoglu M, Nedosekin DA, Simanovsky Y, Galanzha EI, Zharov VP. “In vivo photoacoustic time-of-flight velocity measurement of single cells and nanoparticles.” Opt Lett. 2011 Oct 15;36(20):4086-8. doi: 10.1364/OL.36.004086. PMID: 22002394

31. Galanzha EI, Sarimollaoglu M, Nedosekin DA, Keyrouz SG, Mehta JL, Zharov VP. “In vivo flow cytometry of circulating clots using negative photothermal and photoacoustic contrasts.” Cytometry A. 2011 Oct;79(10):814-24. doi: 10.1002/cyto.a.21106. Epub 2011 Aug 16. PMID: 21976458

32. Proskurnin MA, Zhidkova TV, Volkov DS, Sarimollaoglu M, Galanzha EI, Mock D, Nedosekin DA, Zharov VP. “In vivo multispectral photoacoustic and photothermal flow cytometry with multicolor dyes: a potential for real-time assessment of circulation, dye-cell interaction, and blood volume.” Cytometry A. 2011 Oct;79(10):834-47. doi: 10.1002/cyto.a.21127. Epub 2011 Sep 8. PMID: 21905207

33. Nedosekin DA, Sarimollaoglu M, Ye JH, Galanzha EI, Zharov VP. “In vivo ultra-fast photoacoustic flow cytometry of circulating human melanoma cells using near-infrared high-pulse rate lasers.” Cytometry A. 2011 Oct;79(10):825-33. doi: 10.1002/cyto.a.21102. Epub 2011 Jul 22. PMID: 21786417

34. Barnes K, Shafirstein G, Baumler W, Friedman R, Hennings L, Sarimollaoglu M, Webber J, Jackson C, Suen J, Griffin R. “Hyperthermia enhanced image guided laser-ICG therapy:# 42” Lasers Surg Med. 2011 Feb 22;43(S23):920. doi: 10.1002/lsm.21034

35. Nedosekin DA, Sarimollaoglu M, Shashkov EV, Galanzha EI, Zharov VP. “Ultra-fast photoacoustic flow cytometry with a 0.5 MHz pulse repetition rate nanosecond laser”. Opt Express. 2010 Apr 12;18(8):8605-20. doi: 10.1364/OE.18.008605. PMID: 20588705

36. Sarimollaoglu M, Bayrak C. “Musical Instrument Recognition Using Neural Networks and Cepstral Coefficients.” WSEAS Transactions on Signal Processing. 2006 May; 2(5). ISSN 1790-5052.

Conference Proceedings

1. Carey KA, Menyaev YA, Nedosekin DA, Sarimollaoglu M, Galanzha EI, Stumhofer JS, Zharov VP. “Towards early in vivo photoacoustic malaria diagnosis with 10,000-fold sensitivity improvement.” Proc. SPIE. 10064, Photons Plus Ultrasound: Imaging and Sensing 2017, 100641R (24 April 2017); doi: 10.1117/12.2253925.

2. Juratli M, Juratli T, Sarimollaoglu M, Nedosekin D, Galanzha E, Zharov V. "In vivo detection of circulating tumor cells during tumor manipulation." Oncol Res Treat. 2016 Jan;39:103.

3. Sarimollaoglu M, Nedosekin DA, Galanzha EI, Zharov VP. “Identification of rolling circulating tumor cells using photoacoustic time-of-flight method.” Proc. SPIE 8581, Photons Plus Ultrasound: Imaging and Sensing 2013, 858124 (4 March 2013); doi: 10.1117/12.2007964.

4. Juratli M, Galanzha EI, Sarimollaoglu M, Nedosekin DA, Suen JY, Zharov VP. “Photoacoustic monitoring of clot formation during surgery and tumor surgery” Proc. SPIE 8581, Photons Plus Ultrasound: Imaging and Sensing 2013, 85814Q (4 March 2013); doi: 10.1117/12.2008035.

5. Juratli M, Sarimollaoglu M, Nedosekin DA, Galanzha EI, Suen JY, Zharov VP. “Photoacoustic monitoring of circulating tumor cells released during medical procedures” Proc. SPIE 8581, Photons Plus Ultrasound: Imaging and Sensing 2013, 85814O (4 March 2013); doi: 10.1117/12.2007995.

6. Juratli M, Galanzha EI, Sarimollaoglu M, Nedosekin DA, Suen JY, Zharov VP. “In vivo detection of circulating tumor cells during tumor manipulation” Proc. SPIE 8565, Photonic Therapeutics and Diagnostics IX, 85652H (8 March 2013); doi: 10.1117/12.2007986.

7. Nedosekin DA, Sarimollaoglu M, Foster SB, Galanzha EI, Zharov VP. “Photoacoustic-fluorescence in vitro flow cytometry for quantification of absorption, scattering and fluorescence properties of the cells.” Proc. SPIE 8581, Photons Plus Ultrasound: Imaging and Sensing 2013, 85814I (4 March 2013); doi: 10.1117/12.2006304.

8. Sarimollaoglu M, Nedosekin DA, Galanzha EI, Zharov VP. “In-vivo real-time monitoring of nanoparticle clearance rate from blood circulation using high speed flow cytometry.” Proc. SPIE 8427, Biophotonics: Photonic Solutions for Better Health Care III, 84273R (8 May 2012); doi: 10.1117/12.922808.

9. Sarimollaoglu M, Bayrak C. “Musical Instrument Classification Using Neural Networks.” Proceedings of the 5th WSEAS International Conference on Signal Processing (SIP'06); May 27-29, 2006, Istanbul, Turkey. ISSN: 1790-5117.

10. Bayrak C, Halic T, Sarimollaoglu M, Sarioglu ES, Ulusar U. “MEKTEP: Modular Environment for Knowledge Tracking and Extension Process.” Proceedings of the Global Educational Technology Symposium; May 4-5, 2005; Little Rock, AR.

11. Dagtas S, Sarimollaoglu M and Iqbal K. “A Multi-modal Virtual Environment with Text-Independent Real-Time Speaker Identification.” Proceedings of the Sixth IEEE International Symposium on Multimedia Software Engineering (ISMSE 2004); pp. 557-560. December 13-15, 2004, Miami, FL. doi: 10.1109/MMSE.2004.14.

12. Sarimollaoglu M, Dagtas S, Iqbal K, Bayrak C. “A Text-Independent Speaker Identification System Using Probabilistic Neural Networks.” Proceedings of the International Conference on Computing, Communication and Control Technologies (CCCT 2004); Volume VII pp. 407-411. August 14-17, 2004, Austin, TX.

13. Bayrak C, Sarioglu ES, Yuce G, Sarimollaoglu M. “MEKTEP: A Next Generation Course Management System.” Proceedings of the 5th International Conference on Information Technology Based Higher Education and Training: ITHET 2004, pp. 32-36. May 31 - June 2, 2004, Istanbul, Turkey. doi: 10.1109/ITHET.2004.1358132.

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